# -*- coding: utf-8 -*- """ HyTools: Hyperspectral image processing library Copyright (C) 2021 University of Wisconsin Authors: Adam Chlus, Zhiwei Ye, Philip Townsend. This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, version 3 of the License. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see . This module contain functions for generating boolean masks specific to apply image corrections and models. """ from scipy.ndimage.morphology import binary_erosion import numpy as np from .cloud import zhai_cloud def ndi(hy_obj,args): mask = hy_obj.ndi(args['band_1'],args['band_2']) mask = (mask >= float(args['min'])) & (mask <= float(args['max'])) return mask def ancillary(hy_obj,args): ''' Mask ancillary datasets based off min and max threshold ''' if args['name'] == 'cosine_i': mask= hy_obj.cosine_i() else: mask = hy_obj.get_anc(args['name']) mask = (mask >= float(args['min'])) & (mask <= float(args['max'])) return mask def neon_edge(hy_obj,args): ''' Mask artifacts in NEON images around edges. ''' radius =args['radius'] y_grid, x_grid = np.ogrid[-radius: radius + 1, -radius: radius + 1] window = (x_grid**2 + y_grid**2 <= radius**2).astype(np.float32) buffer_edge = binary_erosion(hy_obj.mask['no_data'], window).astype(bool) return buffer_edge def kernel_finite(hy_obj,args): ''' Create NDVI bin class mask ''' k_vol = hy_obj.volume_kernel(hy_obj.brdf['volume']) k_geom = hy_obj.geom_kernel(hy_obj.brdf['geometric'], b_r=hy_obj.brdf["b/r"], h_b =hy_obj.brdf["h/b"]) mask = np.isfinite(k_vol) & np.isfinite(k_geom) return mask def cloud(hy_obj,args): if args['method'] == 'zhai_2018': mask = ~zhai_cloud(hy_obj,args['cloud'],args['shadow'], args['T1'], args['t2'], args['t3'], args['t4'], args['T7'], args['T8']) return mask def water(hy_obj,args): ''' Create water mask using NDWI threshold ''' mask = hy_obj.ndi(args['band_1'],args['band_2']) mask = mask <= float(args['threshold']) mask = binary_erosion(mask) return mask def external(hy_obj,args): '''Load a mask from an external dataset ''' hy_obj.anc_path['external_mask'] = [args['files'][hy_obj.file_name], 0] mask = hy_obj.get_anc('external_mask') == args['class'] return mask def band(hy_obj,args): ''' Create mask using band thresholds ''' mask = hy_obj.get_wave(args['band']) mask = (mask >= float(args['min'])) & (mask <= float(args['max'])) return mask