# -*- coding: utf-8 -*-
"""
HyTools:  Hyperspectral image processing library
Copyright (C) 2021 University of Wisconsin

Authors: Adam Chlus, Zhiwei Ye, Philip Townsend.

This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, version 3 of the License.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program.  If not, see <https://www.gnu.org/licenses/>.

NEON AOP HDF opener
"""
import h5py
import numpy as np


def open_neon(hy_obj, no_data = -9999):
    """Load and parse NEON formated HDF image into a HyTools file object.

    Args:
        src_file (str): pathname of input HDF file.
        no_data (float, optional): No data value. Defaults to -9999.

    Returns:
        HyTools file object: Populated HyTools file object.

    """

    hdf_obj = h5py.File(hy_obj.file_name,'r')
    hy_obj.base_key = list(hdf_obj.keys())[0]
    metadata = hdf_obj[hy_obj.base_key]["Reflectance"]["Metadata"]
    data = hdf_obj[hy_obj.base_key]["Reflectance"]["Reflectance_Data"]

    hy_obj.projection = metadata['Coordinate_System']['Coordinate_System_String'][()].decode("utf-8")
    hy_obj.map_info = metadata['Coordinate_System']['Map_Info'][()].decode("utf-8").split(',')
    hy_obj.transform = (float(hy_obj.map_info [3]),float(hy_obj.map_info [1]),0,float(hy_obj.map_info [4]),0,-float(hy_obj.map_info [2]))
    hy_obj.fwhm =  metadata['Spectral_Data']['FWHM'][()]
    hy_obj.wavelengths = metadata['Spectral_Data']['Wavelength'][()]
    hy_obj.wavelength_units = metadata['Spectral_Data']['Wavelength'].attrs['Units']
    hy_obj.lines = data.shape[0]
    hy_obj.columns = data.shape[1]
    hy_obj.bands = data.shape[2]
    hy_obj.bad_bands = np.array([False for band in range(hy_obj.bands)])
    hy_obj.no_data = no_data
    hy_obj.anc_path = {'path_length': ['Ancillary_Imagery','Path_Length'],
                        'sensor_az': ['to-sensor_Azimuth_Angle'],
                        'sensor_zn': ['to-sensor_Zenith_Angle'],
                        'solar_az': ['Logs','Solar_Azimuth_Angle'],
                        'solar_zn': ['Logs','Solar_Zenith_Angle'],
                        'slope': ['Ancillary_Imagery','Slope'],
                        'aspect':['Ancillary_Imagery','Aspect'],
                        'aod': ['Ancillary_Imagery','Aerosol_Optical_Depth'],
                        'sky_view': ['Ancillary_Imagery','Sky_View_Factor'],
                        'illum_factor': ['Ancillary_Imagery','Illumination_Factor'],
                        'elevation;': ['Ancillary_Imagery','Smooth_Surface_Elevation'],
                        'cast_shadow': ['Ancillary_Imagery','Cast_Shadow'],
                        'dense_veg': ['Ancillary_Imagery','Dark_Dense_Vegetation_Classification'],
                        'visibility_index': ['Ancillary_Imagery','Visibility_Index_Map'],
                        'haze_water_cloud': ['Ancillary_Imagery','Haze_Water_Cloud_Map'],
                        'water_vapor': ['Ancillary_Imagery','Water_Vapor_Column']}

    return hy_obj